PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.341410.1
Common NameCsa_3G850530, LOC101214746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 150aa    MW: 16640.1 Da    PI: 10.0816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.341410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-0774115854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r+RR++i +++  L++l+P        K++  ++L +A  Y+k L
  Cucsa.341410.1  74 AARKRREKISEKIRVLQRLVPGG-----SKMDIGSMLDEAASYLKFL 115
                     569******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.84E-1065120No hitNo description
PROSITE profilePS5088814.84366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1267123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1369126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-475115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
PSSTNSTTLS PSPSPSSSNI EEIEQAVDRD QVVSQMKEWI YYAAVFRPVN LGLETVEKKR  60
RKNVKMSKEP QTVAARKRRE KISEKIRVLQ RLVPGGSKMD IGSMLDEAAS YLKFLRAQIK  120
ALEGLTYKFG SIDCLSTCTP LNSTFPTNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662EKKRRKN
25761KKRRK
35978RRKNVKMSKEPQTVAARKRR
47580RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146860.11e-105PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D23e-46BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0A0LDH71e-105A0A0A0LDH7_CUCSA; Uncharacterized protein
STRINGGLYMA07G01611.14e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-38bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]